Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20566

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 311

Length: 519
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23


Found at i:232 original size:6 final size:6

Alignment explanation


    Indices: 223--268  Score: 92
    Period size: 6  Copynumber: 7.7  Consensus size: 6

        213 TTCATACGAC

                                                                 
        223 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATG
          1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATG

        269 AAGATGAAGA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33


Consensus pattern (6 bp):   
GATGGT

Done.