Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14972

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 960
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29


Found at i:443 original size:18 final size:18

Alignment explanation


    Indices: 420--458  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        410 GAGGAGAATA

                              
        420 TGGGGTTGGTACCACTAG
          1 TGGGGTTGGTACCACTAG

                              
        438 TGGGGTTGGTACCACTAG
          1 TGGGGTTGGTACCACTAG

               
        456 TGG
          1 TGG

        459 ATATTTTCGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.15, C:0.15, G:0.41, T:0.28


Consensus pattern (18 bp):   
TGGGGTTGGTACCACTAG
Done.