Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05659

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5340
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:219 original size:36 final size:36

Alignment explanation


    Indices: 172--246  Score: 132
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        162 GGCTTCTGCT

                                 *          *   
        172 GGAGATGGAAGTTCTGGTGAAGCTGAAACTGTTGCC
          1 GGAGATGGAAGTTCTGGTGAAACTGAAACTGTAGCC

                                                
        208 GGAGATGGAAGTTCTGGTGAAACTGAAACTGTAGCC
          1 GGAGATGGAAGTTCTGGTGAAACTGAAACTGTAGCC

               
        244 GGA
          1 GGA

        247 AAAACTGGAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.28, C:0.13, G:0.36, T:0.23


Consensus pattern (36 bp):   
GGAGATGGAAGTTCTGGTGAAACTGAAACTGTAGCC
Done.