Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05845

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:888 original size:3 final size:3

Alignment explanation


    Indices: 880--905  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        870 GAGCTTGGAC

                                              
        880 CAT CAT CAT CAT CAT CAT CAT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CA

        906 ATCTCAAGCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31


Consensus pattern (3 bp):   
CAT

Done.