Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16321

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3707
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28


Found at i:311 original size:15 final size:15

Alignment explanation


    Indices: 291--325  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        281 AATCGCCAGT

                           
        291 GAAGACTACACCGAA
          1 GAAGACTACACCGAA

                           
        306 GAAGACTACACCGAA
          1 GAAGACTACACCGAA

                 
        321 GAAGA
          1 GAAGA

        326 ATGGGATGAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.49, C:0.23, G:0.23, T:0.06


Consensus pattern (15 bp):   
GAAGACTACACCGAA
Done.