Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12855

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 390

Length: 651
ACGTcount: A:0.32, C:0.24, G:0.25, T:0.18


Found at i:315 original size:21 final size:21

Alignment explanation


    Indices: 286--328  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        276 TTCGGCTTCT

                                 
        286 GCCGCAGCTAAGAAACCAGCC
          1 GCCGCAGCTAAGAAACCAGCC

                *            *   
        307 GCCGTAGCTAAGAAACCTGCC
          1 GCCGCAGCTAAGAAACCAGCC

             
        328 G
          1 G

        329 TCGCGAAGCC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.30, C:0.35, G:0.26, T:0.09


Consensus pattern (21 bp):   
GCCGCAGCTAAGAAACCAGCC
Done.