Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14753

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3801
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27


Found at i:624 original size:3 final size:3

Alignment explanation


    Indices: 616--668  Score: 72
    Period size: 3  Copynumber: 17.7  Consensus size: 3

        606 TGAGAAGCCA

                         *        *                                     
        616 AAG AAG AAG ATG AAG AAA AAG AAG AAG AAG AAG AAG AAG AA- AACG
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G

                      
        661 AAG AAG AA
          1 AAG AAG AA

        669 AGTGGAAATA


Statistics
Matches: 44,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
   2    2  0.05
   3   40  0.91
   4    2  0.05

ACGTcount: A:0.68, C:0.02, G:0.28, T:0.02


Consensus pattern (3 bp):   
AAG

Done.