Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20012

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1637
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:1547 original size:12 final size:12

Alignment explanation


    Indices: 1530--1559  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       1520 GAGGTCAAAA

                        
       1530 GATGATTACGAT
          1 GATGATTACGAT

                   *    
       1542 GATGATTCCGAT
          1 GATGATTACGAT

                  
       1554 GATGAT
          1 GATGAT

       1560 AAATTCAACG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33


Consensus pattern (12 bp):   
GATGATTACGAT
Done.