Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32156

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2231
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24


Found at i:1270 original size:9 final size:9

Alignment explanation


    Indices: 1256--1306  Score: 57
    Period size: 9  Copynumber: 5.7  Consensus size: 9

       1246 GAGGAAATGT

                     
       1256 AGAGGAACA
          1 AGAGGAACA

                  *  
       1265 AGAGGATCA
          1 AGAGGAACA

            *        
       1274 CGAGGAACA
          1 AGAGGAACA

            *    *   
       1283 GGAGGTACA
          1 AGAGGAACA

               *     
       1292 AGATGAACA
          1 AGAGGAACA

                  
       1301 AGAGGA
          1 AGAGGA

       1307 GCAGCATGAA


Statistics
Matches: 33,  Mismatches: 9, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   9   33  1.00

ACGTcount: A:0.47, C:0.12, G:0.35, T:0.06


Consensus pattern (9 bp):   
AGAGGAACA

Done.