Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17594

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1848
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30


Found at i:22 original size:6 final size:6

Alignment explanation


    Indices: 13--55  Score: 68
    Period size: 6  Copynumber: 7.2  Consensus size: 6

          3 GTCGCCGCCA

                 *         *                                  
         13 GCAGCA GCAGCG GTAGCG GCAGCG GCAGCG GCAGCG GCAGCG G
          1 GCAGCG GCAGCG GCAGCG GCAGCG GCAGCG GCAGCG GCAGCG G

         56 GCGGAGGAGG


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.19, C:0.30, G:0.49, T:0.02


Consensus pattern (6 bp):   
GCAGCG

Done.