Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12123

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1290
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25


Found at i:978 original size:63 final size:63

Alignment explanation


    Indices: 901--1019  Score: 229
    Period size: 63  Copynumber: 1.9  Consensus size: 63

        891 TTTACCTACA

                                                                           
        901 GCCCCGTCTCACTATCCATCATCCTATCAAGGTTCCGAGACTCCTTACAATCCTCCACAATCG
          1 GCCCCGTCTCACTATCCATCATCCTATCAAGGTTCCGAGACTCCTTACAATCCTCCACAATCG

                                               *                    
        964 GCCCCGTCTCACTATCCATCATCCTATCAAGGTTCTGAGACTCCTTACAATCCTCC
          1 GCCCCGTCTCACTATCCATCATCCTATCAAGGTTCCGAGACTCCTTACAATCCTCC

       1020 CCAGTCAGCT


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  63   55  1.00

ACGTcount: A:0.23, C:0.39, G:0.11, T:0.27


Consensus pattern (63 bp):   
GCCCCGTCTCACTATCCATCATCCTATCAAGGTTCCGAGACTCCTTACAATCCTCCACAATCG
Done.