Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10150

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1773
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27


Found at i:796 original size:45 final size:48

Alignment explanation


    Indices: 717--837  Score: 133
    Period size: 45  Copynumber: 2.6  Consensus size: 48

        707 CTCAACCAGG

                *   *      *    *                            
        717 ACACGAAGCACGACCTAATGTTTCTACTCCGTCCCC-T-T-CATCGAAA
          1 ACACAAAGTACGACCCAATGCTTCTACTCCGTCCCCTTCTCCATC-AAA

                                      *  *                  
        763 A-ACAAAGTACGACCCAATGCTTCTATTCTGTCCCCTTCTCCATCAAA
          1 ACACAAAGTACGACCCAATGCTTCTACTCCGTCCCCTTCTCCATCAAA

                       * *              
        810 ACACAAAGTACAATCCAATGCTTCTACT
          1 ACACAAAGTACGACCCAATGCTTCTACT

        838 GCTTCTACTT


Statistics
Matches: 62,  Mismatches: 9, Indels: 6
        0.81            0.12        0.08

Matches are distributed among these distances:
  45   28  0.45
  46    2  0.03
  47    5  0.08
  48   27  0.44

ACGTcount: A:0.31, C:0.33, G:0.10, T:0.26


Consensus pattern (48 bp):   
ACACAAAGTACGACCCAATGCTTCTACTCCGTCCCCTTCTCCATCAAA
Done.