Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25408

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 426

Length: 711
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26


Found at i:601 original size:3 final size:3

Alignment explanation


    Indices: 593--626  Score: 68
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        583 CAGCTAGACT

                                                         
        593 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA C
          1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA C

        627 ACATTCATGC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32


Consensus pattern (3 bp):   
CTA

Done.