Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16687

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25


Found at i:942 original size:12 final size:12

Alignment explanation


    Indices: 925--954  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        915 ATCAGGAACG

                        
        925 ACGCCAATGCCA
          1 ACGCCAATGCCA

                       *
        937 ACGCCAATGCCT
          1 ACGCCAATGCCA

                  
        949 ACGCCA
          1 ACGCCA

        955 TATTTCCCGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.43, G:0.17, T:0.10


Consensus pattern (12 bp):   
ACGCCAATGCCA
Done.