Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10598

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4776
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:136 original size:39 final size:39

Alignment explanation


    Indices: 80--191  Score: 179
    Period size: 39  Copynumber: 2.9  Consensus size: 39

         70 CGCCCTCCTC

                                       *           
         80 CTCCTTCATCCACTCCTCCAATCAGGCGCTCGAGTTATA
          1 CTCCTTCATCCACTCCTCCAATCAGGCCCTCGAGTTATA

                      * *                  *       
        119 CTCCTTCATCTAGTCCTCCAATCAGGCCCTCCAGTTATA
          1 CTCCTTCATCCACTCCTCCAATCAGGCCCTCGAGTTATA

                                     *        
        158 CTCCTTCATCCACTCCTCCAATCAGACCCTCGAG
          1 CTCCTTCATCCACTCCTCCAATCAGGCCCTCGAG

        192 GGTAAATGAA


Statistics
Matches: 65,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  39   65  1.00

ACGTcount: A:0.21, C:0.41, G:0.11, T:0.28


Consensus pattern (39 bp):   
CTCCTTCATCCACTCCTCCAATCAGGCCCTCGAGTTATA
Done.