Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05226

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 457

Length: 762
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24


Found at i:283 original size:15 final size:15

Alignment explanation


    Indices: 263--293  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        253 CGCCCCACTT

                       *   
        263 TCAGAGTCTCCTCCC
          1 TCAGAGTCTCCACCC

                           
        278 TCAGAGTCTCCACCC
          1 TCAGAGTCTCCACCC

             
        293 T
          1 T

        294 TAAAATCACG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.16, C:0.45, G:0.13, T:0.26


Consensus pattern (15 bp):   
TCAGAGTCTCCACCC
Done.