Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32559

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 378

Length: 630
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20


Found at i:120 original size:15 final size:15

Alignment explanation


    Indices: 100--149  Score: 64
    Period size: 15  Copynumber: 3.3  Consensus size: 15

         90 TGTAGTTGAA

                           
        100 GATGACGACGACAAC
          1 GATGACGACGACAAC

                        * *
        115 GATGACGACGACGAT
          1 GATGACGACGACAAC

                    *     *
        130 GATGACGATGACAAG
          1 GATGACGACGACAAC

                 
        145 GATGA
          1 GATGA

        150 AGATGATGCC


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  15   30  1.00

ACGTcount: A:0.38, C:0.18, G:0.32, T:0.12


Consensus pattern (15 bp):   
GATGACGACGACAAC
Done.