Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26234

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 905

Length: 1509
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28


Found at i:449 original size:15 final size:15

Alignment explanation


    Indices: 425--455  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        415 GCCAATGAGG

                           
        425 TCTTTGCAACTTTTT
          1 TCTTTGCAACTTTTT

                 *         
        440 TCTTTTCAACTTTTT
          1 TCTTTGCAACTTTTT

             
        455 T
          1 T

        456 GTATTCATTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.13, C:0.19, G:0.03, T:0.65


Consensus pattern (15 bp):   
TCTTTGCAACTTTTT
Done.