Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33393

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 374

Length: 624
ACGTcount: A:0.34, C:0.15, G:0.33, T:0.18


Found at i:308 original size:6 final size:6

Alignment explanation


    Indices: 297--370  Score: 130
    Period size: 6  Copynumber: 12.3  Consensus size: 6

        287 TGGAGCTGGT

                                                                 * 
        297 GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGAA
          1 GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA

                          *               
        345 GCAGGA GCAGGA ACAGGA GCAGGA GC
          1 GCAGGA GCAGGA GCAGGA GCAGGA GC

        371 CACAGCCGCA


Statistics
Matches: 64,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   64  1.00

ACGTcount: A:0.35, C:0.18, G:0.47, T:0.00


Consensus pattern (6 bp):   
GCAGGA

Done.