Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04019

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 527

Length: 879
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28


Found at i:50 original size:18 final size:18

Alignment explanation


    Indices: 12--50  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

          2 TGGGCAGCAC

                           *  
         12 TTCTTTATCTCCCTCTAT
          1 TTCTTTATCTCCCTCCAT

                  *         * 
         30 TTCTTTGTCTCCCTCCCT
          1 TTCTTTATCTCCCTCCAT

               
         48 TTC
          1 TTC

         51 CCCTCATTCT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.05, C:0.38, G:0.03, T:0.54


Consensus pattern (18 bp):   
TTCTTTATCTCCCTCCAT
Done.