Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26507

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 595

Length: 993
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26


Found at i:796 original size:30 final size:30

Alignment explanation


    Indices: 760--819  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        750 CTATGAGATG

                                          
        760 GATGATTGGGATGATGATTGCTCGGACTAC
          1 GATGATTGGGATGATGATTGCTCGGACTAC

                                          
        790 GATGATTGGGATGATGATTGCTCGGACTAC
          1 GATGATTGGGATGATGATTGCTCGGACTAC

        820 TCTGACAATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30


Consensus pattern (30 bp):   
GATGATTGGGATGATGATTGCTCGGACTAC
Done.