Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11024

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1776 original size:18 final size:18

Alignment explanation


    Indices: 1753--1790  Score: 67
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1743 CGCAGAATCC

                    *         
       1753 GAAACAGAGAGCAGAAAT
          1 GAAACAGAAAGCAGAAAT

                              
       1771 GAAACAGAAAGCAGAAAT
          1 GAAACAGAAAGCAGAAAT

              
       1789 GA
          1 GA

       1791 TCAATAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.58, C:0.11, G:0.26, T:0.05


Consensus pattern (18 bp):   
GAAACAGAAAGCAGAAAT
Done.