Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03688

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1308
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Found at i:106 original size:18 final size:18

Alignment explanation


    Indices: 83--122  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

         73 GCTGTTGGTG

                              
         83 GTGCTCAACCTGCTGGAA
          1 GTGCTCAACCTGCTGGAA

                    *        *
        101 GTGCTCAATCTGCTGGAG
          1 GTGCTCAACCTGCTGGAA

                
        119 GTGC
          1 GTGC

        123 GCAGGGTGGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25


Consensus pattern (18 bp):   
GTGCTCAACCTGCTGGAA
Done.