Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20179

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 577

Length: 963
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.18


Found at i:876 original size:12 final size:14

Alignment explanation


    Indices: 859--895  Score: 51
    Period size: 12  Copynumber: 2.7  Consensus size: 14

        849 AGAGATGGAC

                          
        859 GCTGCTGCAAA-A-
          1 GCTGCTGCAAAGAG

                           
        871 GCTGCTGCACAAGAG
          1 GCTGCTGCA-AAGAG

                      
        886 GCTGCTGCAA
          1 GCTGCTGCAA

        896 GGAGTGCGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    9  0.41
  13    2  0.09
  14    2  0.09
  15    9  0.41

ACGTcount: A:0.27, C:0.27, G:0.30, T:0.16


Consensus pattern (14 bp):   
GCTGCTGCAAAGAG
Done.