Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14146

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3363
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:2872 original size:15 final size:15

Alignment explanation


    Indices: 2852--2884  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       2842 AGAGGAGCAT

                           
       2852 CGGTTTGCTGTTTCC
          1 CGGTTTGCTGTTTCC

                           
       2867 CGGTTTGCTGTTTCC
          1 CGGTTTGCTGTTTCC

               
       2882 CGG
          1 CGG

       2885 AAACCGAAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.00, C:0.27, G:0.30, T:0.42


Consensus pattern (15 bp):   
CGGTTTGCTGTTTCC
Done.