Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26814

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 205
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.28


Found at i:108 original size:24 final size:24

Alignment explanation


    Indices: 76--137  Score: 124
    Period size: 24  Copynumber: 2.6  Consensus size: 24

         66 ACCCCACGCC

                                    
         76 TTGGGAATGATGGTATGGATGGCT
          1 TTGGGAATGATGGTATGGATGGCT

                                    
        100 TTGGGAATGATGGTATGGATGGCT
          1 TTGGGAATGATGGTATGGATGGCT

                          
        124 TTGGGAATGATGGT
          1 TTGGGAATGATGGT

        138 CTAGGGAATG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   38  1.00

ACGTcount: A:0.21, C:0.03, G:0.42, T:0.34


Consensus pattern (24 bp):   
TTGGGAATGATGGTATGGATGGCT

Found at i:144 original size:15 final size:15

Alignment explanation


    Indices: 126--166  Score: 73
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        116 GGATGGCTTT

                           
        126 GGGAATGATGGTCTA
          1 GGGAATGATGGTCTA

                        *  
        141 GGGAATGATGGTTTA
          1 GGGAATGATGGTCTA

                       
        156 GGGAATGATGG
          1 GGGAATGATGG

        167 CAATGGTGGG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.27, C:0.02, G:0.44, T:0.27


Consensus pattern (15 bp):   
GGGAATGATGGTCTA
Done.