Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26739

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 945
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25


Found at i:748 original size:15 final size:15

Alignment explanation


    Indices: 730--785  Score: 53
    Period size: 15  Copynumber: 3.7  Consensus size: 15

        720 TGAAGTCGAA

                           
        730 GATGATGAAGATTAT
          1 GATGATGAAGATTAT

                   **   *  
        745 GATGATGGTGATGAT
          1 GATGATGAAGATTAT

                             
        760 GTAT-ATGAAG-TTGAT
          1 G-ATGATGAAGATT-AT

                       
        775 GATGATGAAGA
          1 GATGATGAAGA

        786 GCTGGAGGAG


Statistics
Matches: 31,  Mismatches: 6, Indels: 7
        0.70            0.14        0.16

Matches are distributed among these distances:
  14    3  0.10
  15   26  0.84
  16    2  0.06

ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32


Consensus pattern (15 bp):   
GATGATGAAGATTAT
Done.