Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29310

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24


Found at i:1407 original size:3 final size:3

Alignment explanation


    Indices: 1399--1442  Score: 79
    Period size: 3  Copynumber: 14.7  Consensus size: 3

       1389 GGAGAAACAG

                                                             *        
       1399 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CCT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA

       1443 ACCGCAGCAA


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32


Consensus pattern (3 bp):   
CAT

Done.