Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13890

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26


Found at i:165 original size:21 final size:21

Alignment explanation


    Indices: 141--180  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        131 ATTCTGAAGA

                                 
        141 AGAACAACAAGAAGAAGAACC
          1 AGAACAACAAGAAGAAGAACC

                   * *         
        162 AGAACAAGAGGAAGAAGAA
          1 AGAACAACAAGAAGAAGAA

        181 GATGACCCAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.62, C:0.12, G:0.25, T:0.00


Consensus pattern (21 bp):   
AGAACAACAAGAAGAAGAACC
Done.