Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06309

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 549

Length: 915
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31


Found at i:368 original size:23 final size:22

Alignment explanation


    Indices: 333--378  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        323 CCGAACGTGG

                *   *              
        333 TTCGGGAAGTGGACATCTCGATT
          1 TTCGCGAAATGGACAT-TCGATT

                         *        
        356 TTCGCGAAATGGAGATTCGATT
          1 TTCGCGAAATGGACATTCGATT

             
        378 T
          1 T

        379 CTTCGAACTG


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  22    7  0.35
  23   13  0.65

ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33


Consensus pattern (22 bp):   
TTCGCGAAATGGACATTCGATT
Done.