Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18746

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 174
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46


Found at i:120 original size:6 final size:6

Alignment explanation


    Indices: 109--144  Score: 54
    Period size: 6  Copynumber: 6.0  Consensus size: 6

         99 TCTTTCTTCC

                                    **               
        109 TCTGTT TCTGTT TCTGTT TCTCAT TCTGTT TCTGTT
          1 TCTGTT TCTGTT TCTGTT TCTGTT TCTGTT TCTGTT

        145 ACTCTTATCT


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.03, C:0.19, G:0.14, T:0.64


Consensus pattern (6 bp):   
TCTGTT

Done.