Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25551

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29


Found at i:241 original size:6 final size:6

Alignment explanation


    Indices: 230--260  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        220 CCCTATCTAG

                                                
        230 ACGATC ACGATC ACGATC ACGATC ACGATC A
          1 ACGATC ACGATC ACGATC ACGATC ACGATC A

        261 TCATCATCAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.35, C:0.32, G:0.16, T:0.16


Consensus pattern (6 bp):   
ACGATC

Done.