Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11744

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2838
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25


Found at i:1242 original size:18 final size:18

Alignment explanation


    Indices: 1229--1263  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1219 GCTGAAGATA

                *             
       1229 CTGATGAAGATGAAGAAT
          1 CTGAAGAAGATGAAGAAT

                      *      
       1247 CTGAAGAAGAAGAAGAA
          1 CTGAAGAAGATGAAGAA

       1264 GATGATGAAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.51, C:0.06, G:0.29, T:0.14


Consensus pattern (18 bp):   
CTGAAGAAGATGAAGAAT
Done.