Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02302

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 822
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:328 original size:3 final size:3

Alignment explanation


    Indices: 310--344  Score: 52
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        300 AAAACCAAGT

                      *   *                               
        310 GAA GAA GAT GAC GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        345 TGGGTTGCCT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.60, C:0.03, G:0.34, T:0.03


Consensus pattern (3 bp):   
GAA

Done.