Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05617

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24


Found at i:568 original size:24 final size:24

Alignment explanation


    Indices: 541--588  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        531 ACCCGAACAA

                                    
        541 GTAGAACAAACCCAACGTGAAGAG
          1 GTAGAACAAACCCAACGTGAAGAG

                                    
        565 GTAGAACAAACCCAACGTGAAGAG
          1 GTAGAACAAACCCAACGTGAAGAG

        589 CGAGGCTTTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.46, C:0.21, G:0.25, T:0.08


Consensus pattern (24 bp):   
GTAGAACAAACCCAACGTGAAGAG
Done.