Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07092

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1443
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:25 original size:15 final size:15

Alignment explanation


    Indices: 5--34  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

          1 ATGG

                   *       
          5 CTCCTTCTTCTTCTT
          1 CTCCTTCATCTTCTT

                           
         20 CTCCTTCATCTTCTT
          1 CTCCTTCATCTTCTT

         35 GTTCTGCTTC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.03, C:0.40, G:0.00, T:0.57


Consensus pattern (15 bp):   
CTCCTTCATCTTCTT
Done.