Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33797

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26


Found at i:29 original size:12 final size:12

Alignment explanation


    Indices: 8--40  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

          1 ATGGCTA

                        
          8 TGGAAGAGACAG
          1 TGGAAGAGACAG

                         
         20 -GGAGAGAGACAG
          1 TGGA-AGAGACAG

                     
         32 TGGAAGAGA
          1 TGGAAGAGA

         41 AAACTCCAGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    3  0.16
  12   13  0.68
  13    3  0.16

ACGTcount: A:0.42, C:0.06, G:0.45, T:0.06


Consensus pattern (12 bp):   
TGGAAGAGACAG
Done.