Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18354

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 312

Length: 521
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.16


Found at i:473 original size:24 final size:25

Alignment explanation


    Indices: 438--516  Score: 74
    Period size: 24  Copynumber: 3.3  Consensus size: 25

        428 TTTCTATATT

                    *                
        438 CCGGG-ATGGCTCACCAGAGCACCG
          1 CCGGGAATAGCTCACCAGAGCACCG

                            *  *     
        462 CCGGGAA-AGCTCACCGGACCACCG
          1 CCGGGAATAGCTCACCAGAGCACCG

                    * *  **          
        486 CC-GGAATGGATCGTCAGAGCACCG
          1 CCGGGAATAGCTCACCAGAGCACCG

                   
        510 CCGGGAA
          1 CCGGGAA

        517 CCTAA


Statistics
Matches: 43,  Mismatches: 9, Indels: 5
        0.75            0.16        0.09

Matches are distributed among these distances:
  23    4  0.09
  24   34  0.79
  25    5  0.12

ACGTcount: A:0.24, C:0.35, G:0.33, T:0.08


Consensus pattern (25 bp):   
CCGGGAATAGCTCACCAGAGCACCG
Done.