Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07387

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 943

Length: 1572
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20


Found at i:111 original size:22 final size:24

Alignment explanation


    Indices: 72--115  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

         62 AGGACTTACT

                         *          
         72 AAAAAAGGACAAGGAAAAGAGAGA
          1 AAAAAAGGACAAGAAAAAGAGAGA

                                  
         96 AAAAAAGGA-AA-AAAAAGAGA
          1 AAAAAAGGACAAGAAAAAGAGA

        116 AAGATAAAAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22    8  0.42
  23    2  0.11
  24    9  0.47

ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00


Consensus pattern (24 bp):   
AAAAAAGGACAAGAAAAAGAGAGA
Done.