Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18662

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1345
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28


Found at i:1289 original size:24 final size:24

Alignment explanation


    Indices: 1262--1311  Score: 82
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1252 CTTACTAATC

                          *     *   
       1262 GAACAATTCCAAACTACAACTGAG
          1 GAACAATTCCAAACCACAACCGAG

                                    
       1286 GAACAATTCCAAACCACAACCGAG
          1 GAACAATTCCAAACCACAACCGAG

              
       1310 GA
          1 GA

       1312 TACGGGTGGT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.46, C:0.28, G:0.14, T:0.12


Consensus pattern (24 bp):   
GAACAATTCCAAACCACAACCGAG
Done.