Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28132

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27


Found at i:753 original size:15 final size:15

Alignment explanation


    Indices: 733--762  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        723 TTCCGAAGAA

                   *       
        733 GGAAAGAGGCTAAAC
          1 GGAAAGAAGCTAAAC

                           
        748 GGAAAGAAGCTAAAC
          1 GGAAAGAAGCTAAAC

        763 ATTTCAGAAG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.50, C:0.13, G:0.30, T:0.07


Consensus pattern (15 bp):   
GGAAAGAAGCTAAAC
Done.