Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16760

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2213
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28


Found at i:1436 original size:3 final size:3

Alignment explanation


    Indices: 1428--1461  Score: 68
    Period size: 3  Copynumber: 11.3  Consensus size: 3

       1418 ATTTACTGTT

                                                         
       1428 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G

       1462 TCTGTTTCAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.32, C:0.32, G:0.35, T:0.00


Consensus pattern (3 bp):   
GCA

Done.