Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35291

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 282

Length: 471
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31


Found at i:452 original size:15 final size:15

Alignment explanation


    Indices: 434--464  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        424 ATTCACCATG

                           
        434 TCAGAATTGATGTTA
          1 TCAGAATTGATGTTA

                           
        449 TCAGAATTGATGTTA
          1 TCAGAATTGATGTTA

             
        464 T
          1 T

        465 AGTGTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42


Consensus pattern (15 bp):   
TCAGAATTGATGTTA
Done.