Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29717

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 340

Length: 567
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25


Found at i:526 original size:18 final size:18

Alignment explanation


    Indices: 489--549  Score: 59
    Period size: 18  Copynumber: 3.4  Consensus size: 18

        479 AGCCTAAGCC

                  *     *  *  
        489 CCACCATGGCGGCCATCA
          1 CCACCACGGCGGGCACCA

              *  *            
        507 CCGCCGCGGCGGGCACCA
          1 CCACCACGGCGGGCACCA

                  *           
        525 CCACCATGGCGGGCACCA
          1 CCACCACGGCGGGCACCA

              *    
        543 CCCCCAC
          1 CCACCAC

        550 CACCATGGCC


Statistics
Matches: 33,  Mismatches: 10, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  18   33  1.00

ACGTcount: A:0.18, C:0.51, G:0.26, T:0.05


Consensus pattern (18 bp):   
CCACCACGGCGGGCACCA
Done.