Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15652

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1989
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27


Found at i:65 original size:3 final size:3

Alignment explanation


    Indices: 59--86  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         49 GAGACGAAGA

                                                 
         59 AGG AGG AGG AGG AGG AGG AGG AGG AGG A
          1 AGG AGG AGG AGG AGG AGG AGG AGG AGG A

         87 AAACGATGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00


Consensus pattern (3 bp):   
AGG

Done.