Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20133

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23


Found at i:998 original size:24 final size:24

Alignment explanation


    Indices: 823--989  Score: 280
    Period size: 24  Copynumber: 7.0  Consensus size: 24

        813 TACTGCTGGA

                     *              
        823 ATGCCTCCCCACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                     *              
        847 ATGCCTCCCCACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                     *              
        871 ATGCCTCCCCACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                                    
        895 ATGCCTCCCAACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                                    
        919 ATGCCTCCCAACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                 *               *  
        943 ATGCCACCCAACAACATGGGAAGG
          1 ATGCCTCCCAACAACATGGGAGGG

                 *                 
        967 ATGCCACCCAACAACATGGGAGG
          1 ATGCCTCCCAACAACATGGGAGG

        990 AATGACACCG


Statistics
Matches: 139,  Mismatches: 4, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24  139  1.00

ACGTcount: A:0.29, C:0.31, G:0.28, T:0.11


Consensus pattern (24 bp):   
ATGCCTCCCAACAACATGGGAGGG
Done.