Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05302

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 433

Length: 722
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31


Found at i:72 original size:22 final size:21

Alignment explanation


    Indices: 22--72  Score: 57
    Period size: 22  Copynumber: 2.3  Consensus size: 21

         12 CTGTTACTCT

                            *     
         22 CTACCCTCTTTAACCCTAAAAC
          1 CTACCC-CTTTAACCCCAAAAC

              *                 * 
         44 CTTCCCCTTTAAACCCCAAACC
          1 CTACCCCTTT-AACCCCAAAAC

                   
         66 CTACCCC
          1 CTACCCC

         73 AATATCCCCT


Statistics
Matches: 24,  Mismatches: 4, Indels: 2
        0.80            0.13        0.07

Matches are distributed among these distances:
  21    4  0.17
  22   20  0.83

ACGTcount: A:0.27, C:0.49, G:0.00, T:0.24


Consensus pattern (21 bp):   
CTACCCCTTTAACCCCAAAAC
Done.