Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10721

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:45 original size:27 final size:27

Alignment explanation


    Indices: 7--61  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

          1 ATGGAT

                                       
          7 GAAAGGTTGAGAACAGCAGCTCGTACA
          1 GAAAGGTTGAGAACAGCAGCTCGTACA

                                       
         34 GAAAGGTTGAGAACAGCAGCTCGTACA
          1 GAAAGGTTGAGAACAGCAGCTCGTACA

             
         61 G
          1 G

         62 GAAATGTTAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.36, C:0.18, G:0.31, T:0.15


Consensus pattern (27 bp):   
GAAAGGTTGAGAACAGCAGCTCGTACA
Done.