Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35337

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 266

Length: 444
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.24


Found at i:238 original size:27 final size:27

Alignment explanation


    Indices: 208--287  Score: 151
    Period size: 27  Copynumber: 3.0  Consensus size: 27

        198 TGGAGGTTAT

                                       
        208 GGAGGATACGGAGGGCGCGGTGGGTAC
          1 GGAGGATACGGAGGGCGCGGTGGGTAC

                             *         
        235 GGAGGATACGGAGGGCGTGGTGGGTAC
          1 GGAGGATACGGAGGGCGCGGTGGGTAC

                                      
        262 GGAGGATACGGAGGGCGCGGTGGGTA
          1 GGAGGATACGGAGGGCGCGGTGGGTA

        288 TGGTGGTGGT


Statistics
Matches: 51,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   51  1.00

ACGTcount: A:0.19, C:0.12, G:0.56, T:0.12


Consensus pattern (27 bp):   
GGAGGATACGGAGGGCGCGGTGGGTAC
Done.