Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27803

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31


Found at i:273 original size:3 final size:3

Alignment explanation


    Indices: 255--314  Score: 59
    Period size: 3  Copynumber: 20.3  Consensus size: 3

        245 TCAAGCCCTT

                      *   *                         **          *     *    
        255 TGA TGA TGG TGT TGA TGA TGA TGA TGA TGA ACA TGA TGA GGA TGG TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

                             
        303 TGA TGA TG- TGA T
          1 TGA TGA TGA TGA T

        315 AGGTCCAAGA


Statistics
Matches: 45,  Mismatches: 11, Indels: 2
        0.78            0.19        0.03

Matches are distributed among these distances:
   2    2  0.04
   3   43  0.96

ACGTcount: A:0.28, C:0.02, G:0.37, T:0.33


Consensus pattern (3 bp):   
TGA

Done.